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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggcacttgctcttcttttttatgtgatgatttttgaataactagtcatatttaattgtttcttatggagaagaaatatttttgctggaggatttattaattgttttcttacattttgggttttggttggctcctcctttcttccctgctttagCTTCATGTTGCAGAAACTTTTCTCACTTATAGATCAAACATCGGTGCCGGACAACCCTGATTCCTTGCAAAATCATGAGGTTTTACTCCCTGGCCACCTG

Basic information

species Glycine max
transcript GLYMA17G23500.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G23500.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 10
gttaggcacttgctcttct---tttttatgtgatgatttttgaataacta--------gtcatatttaattgtttcttatggagaagaaatatttttgctggagg-atttattaattgttttcttacattttgggttttggttggctcctc---ctttcttccctgctttagCTTCATGTTGCAGAAACTTTTCTCACTTATAGATCAAACATCGGTGCCGGACAACCCTGATTCCTTGCAAAATCATGAGGTTTTACTCCCTGGCCACCTG
||| |  |    ||| | |   ||| | | | ||  || |  ||||  |         ||  ||| |  |  ||  ||     |     ||   | |||| | ||   ||     | |   |  || || ||   || |  || ||        | |  |||  | ||||||||||||| ||||||| |||||||||||||||||||| || || ||||| ||||||||||||   ||||| ||||| || || ||||| ||||| ||| ||
gttggttatcgtctcctttaaatttctgtcttatccttatctaatagttgctaccattgttgtatgttgtctttctttcccttgtttctatgagtgtgcttggggcggttggggttggggatagtatatatttacttattttttgcaatgttaacatagttctttcctttagCTTCATGGTGCAGAAGCTTTTCTCACTTATAGATCAGACTTCTGTGCCAGACAACCCTGATGTATTGCAGAATCAGGAAGTATTACTGCCTGGTCACTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttttcttacattttgggttttggttggctcctcctttcttccctgctttagCTTCATGTTGCAGAAACTTTTCTCACTTATAGATCAAACATCGGTGCCGGACAACCCTGATTCCTTGCAAAATCATGAGGTTTTACTCCCTGGCCACCTG
      ttcttac  putative branch site (score: 2)
                           ttggctcctcctttct  putative PPT
         ttacatttt  TA-rich tract