1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gattaatacccttggtatattgagtgatgagttgtagttacttctctgtttgaaaattctgctgaagctgctaagttaaccctgtgctgtcaatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACAGGACATCCAACAATGCTAAGTTGATTGTCAAAGTTCGCAGAGCGGTCT
species | Glycine max |
transcript | GLYMA17G21590.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTCATTTCCCTATGAAATTACAATCCCTAG TTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACEST: gi|15204778|gb|BI427546.1|BI427546
genomic: CTGTTTCATTTCCCTATGAAATTACAATCCCTAGgtgagttgtg ... caatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGAC
EST: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAG TTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACEST: gi|42722958|gb|CK768857.1|CK768857
genomic: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAGgtgagttgtg ... caatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGAC
EST: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAG TTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACEST: gi|58024099|gb|CX710840.1|CX710840
genomic: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAGgtgagttgtg ... caatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGAC
EST: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAG TTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACEST: gi|22928497|gb|BU545636.1|BU545636
genomic: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAGgtgagttgtg ... caatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGAC
EST: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAG TTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACEST: gi|13563309|gb|BG551529.1|BG551529
genomic: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAGgtgagttgtg ... caatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGAC
EST: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAG TTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACEST: gi|14125643|gb|BG790081.1|BG790081
genomic: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAGgtgagttgtg ... caatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGAC
EST: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAG TTCATCANATTCTGCATTTGGGATGGACATGATCAAGAGAEST: gi|6454536|gb|AW185219.1|AW185219
genomic: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAGgtgagttgtg ... caatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGA
EST: TCCCTATGAAATTACAATCCCTAG TTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACEST: gi|16106039|gb|BI893779.1|BI893779
genomic: TCCCTATGAAATTACAATCCCTAGgtgagttgtg ... caatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGAC
EST: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAG TTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGAC
genomic: CCAAATCTTGAGGGTGCTGTTTCATTTCCCTATGAAATTACAATCCCTAGgtgagttgtg ... caatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGAC
ctgtttgaaaattctgctgaagctgctaagttaaccctgtgctgtcaatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACAGGACATCCAACAATGCTAAGTTGATTGTCAAAGTTCGCAGAGCGGTCT
agttaac putative branch site (score: 3)
tgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattaatacccttggtatattgagtgatgagttgtagttacttctctgtttgaaaattctgctgaagctgctaagttaaccctgtgctgtcaatgaccagTTCATCAGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTACAGACAGGACATCCAACAATGCTAAGTTGATTGTCAAAGTTCGCAGAGCGGTCT
- - - -acccttg
- - - - - - - - - - tgagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgtgc