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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatctcctacttcataattagctgctcaagattaataatcattattctgtaacagccttaaaaccttaacatatgtgcttgcagGTTGAGGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGATCATTGTGGTGCCATAACAGAATCTGTCATTC

Basic information

species Glycine max
transcript GLYMA17G20460.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G20460.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g55560.2 (Oryza sativa), 3'ss of exon 4
gtaagcaatctcctacttcataattagctgctcaagattaataatcattattctgtaacagccttaaaaccttaacatatgtgcttgcagGTTGAGGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGATCATTGTGGTGCCATAACAGAATCTGTCATTC
|||||   |||| |    || | | || || |         || | |||| | | |   |   | |  | ||  | |       |||||| |||| || || || || || || |||||||||||||| |||||||||||||||||||||||   | | |||||||| || || |||||||| || || |
gtaagt--tctcatgtgccaaattgaggtgatattatgcgctagttattaatgtatccaa---tgatcatctggatac-----tttgcagATTGAAGATCGATTCTACATATACCTGGAATATGTTCACCCTGGTTCAATTAATAAATATGTTAATCAACATTGTGGAGCAATGACAGAATCAGTAATCC

upper sequence: GLYMA17G20460.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g02780.1 (Oryza sativa), 3'ss of exon 4
gtaagcaatctcctacttcataattagctgctcaagattaataatcattattctgtaacagccttaaaaccttaacatatgtgcttgcagGTTGAGGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGATCATTGTGGTGCCATAACAGAATCTGTCATTC
    | ||   |||      |    | ||| |||||    ||   |||| |  ||    |  || ||    ||     ||   | ||||| |||| || || || || ||||| |||||||||||||| || |||||||||||||| ||||||    | |||| ||| || || || ||||| ||  | |
----gtaagtccctg-----tggaaatctgatcaagt---atgtccattgtcatgatttattctgaagttgtttttggat---cgtgcagTTTGAAGATCGCTTCTACATTTACCTGGAATATGTTCACCCAGGTTCAATTAATAAGTATGTCAAACAACATTATGGAGCAATGACGGAATCAGTTGTCC

upper sequence: GLYMA17G20460.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G66850.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagcaatctcctacttcata-attagctgctca-agattaataatc-attattctgtaacagc----cttaaaacc---ttaaca----------tatgtgcttgcagGTTGAGGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGATCATTGTGGTGCCATAACAGAATCTGTCATTC
|| || ||||      || ||| ||   ||| | | | ||  |||||| |     |     |||     || ||||     | | ||          | ||    | ||||| || || || || | ||| || |||||||||||||| || |||||||| || |||||| ||||||||||||| ||  |||| |||||||||||  |||
gtgagtaatcaatctgtttatatatcctctgtttacatatatataatctacctacccaaggcagtgtggctgaaaattcattgagcaattctctgattgtgcatgtacagGTAGAAGATCGTTTCTTTATATACCTGGAATATGTTCACCCGGGTTCAATAAACAAATATATCCGTGATCATTGCGGCACCATGACAGAATCTGTTGTTC

upper sequence: GLYMA17G20460.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtaagcaatc---tcctacttcataattagc-tgctcaagattaata--atcattattctgtaacagcct-------taaaaccttaacat-atgtgcttgcagGTTGAGGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGATCATTGTGGTGCCATAACAGAATCTGTCATTC
|| ||  |||   |   |  | ||  |   | |||| || |||  |    | |   |||  ||  | | |       ||| | || ||  | |||    |||||||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||  |||
gtgagtgatccagttgcagattatggtattcatgcttaacatttgtcttgttagatttccatagtaacttaactgattaatatctcaattttatgcctatgcagGTTGAAGACCGGCTTTATATATACCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCTATTACAGAATCTGTTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattaataatcattattctgtaacagccttaaaaccttaacatatgtgcttgcagGTTGAGGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGATCATTGTGGTGCCATAACAGAATCTGTCATTC
                                  ccttaac  putative branch site (score: 3)
     ataatcattattct  TA-rich tract