1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggatatttcttcaaaataagttgaacctaacatgtacttattgtttgatatgattgtgctgtccattcaacaacattcttttttgtttttgcttttccagCTGGATTGGAGATTAGCAGATCATGAAAGGGCTCAAAGTTCTTCAAGTTCTTCAGATGATAAGGTGTCAGAAATTGATAGCACACCCAATAGAGTTTCTG
species | Glycine max |
transcript | GLYMA17G20320.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tgatatgattgtgctgtccattcaacaacattcttttttgtttttgcttttccagCTGGATTGGAGATTAGCAGATCATGAAAGGGCTCAAAGTTCTTCAAGTTCTTCAGATGATAAGGTGTCAGAAATTGATAGCACACCCAATAGAGTTTCTG
gtttgat putative branch site (score: 5)
cattcttttttgtttt putative PPT
attcttttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatatttcttcaaaataagttgaacctaacatgtacttattgtttgatatgattgtgctgtccattcaacaacattcttttttgtttttgcttttccagCTGGATTGGAGATTAGCAGATCATGAAAGGGCTCAAAGTTCTTCAAGTTCTTCAGATGATAAGGTGTCAGAAATTGATAGCACACCCAATAGAGTTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - aaaataa
- - - - - - - - - - - - -cctaaca
- - - - - - - - - - - - - - - - - - - - - - -tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattca