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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttatgcatactctttcttttgcataacccccccacccccctcccaaaaaaaaaagaggttgcacataaattgtgtttaaactgctgtcctttacgacattgtagatagataattttcggaacttttcagGTCAAACTAGATAAACTTGTAAAACCAGACAAAGAAATTGCAGACTACAGAACAGAGATTACTGGTGTCTCTTCTCAAGATCTAGAGGCAGTGACTTGCT

Basic information

species Glycine max
transcript GLYMA17G18400.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296136|gb|FG989496.1|FG989496
EST:     ATGGGACTGAAGCAGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAG                         -TCAAACTAGATAAACTTGTAA
genomic: ATGGGACTGAAGCAGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAGgtaatttatg ... aacttttcagGTCAAACTAGATAAACTTGTAA
EST: gi|213620297|gb|DB961442.1|DB961442
EST:     ATGGGACTGAAGCAGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAA                         GTCAAACTAGATAAACTTGTAAAACCAGAC
genomic: ATGGGACTGAAGCAGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAGgtaatttatg ... aacttttcagGTCAAACTAGATAAACTTGTAAAACCAGAC
EST: gi|209698652|gb|BW652465.1|BW652465
EST:     ATGGGACTGAAGCAGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAG                         GTCAAACTAGATAAACTTGTAAAACCAGACAAAGAAATTGCAGACTACAGA
genomic: ATGGGACTGAAGCAGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAGgtaatttatg ... aacttttcagGTCAAACTAGATAAACTTGTAAAACCAGACAAAGAAATTGCAGACTACAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaactgctgtcctttacgacattgtagatagataattttcggaacttttcagGTCAAACTAGATAAACTTGTAAAACCAGACAAAGAAATTGCAGACTACAGAACAGAGATTACTGGTGTCTCTTCTCAAGATCTAGAGGCAGTGACTTGCT
                                               cttttc  CT-rich tract
                           tagatagataatttt  TA-rich tract