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...gatagtaaataaaaagctgttctggatttcatagcatgaccaaatagaattaagttttttactagtgtggttaatctagaccatttatgacttattacagCAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAG
species | Glycine max |
transcript | GLYMA17G15990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAGGGGCCCAATGAAGGTTATGCAGAAGAAAATGGCTGGCTAGCATCCT CAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGAEST: gi|207765819|gb|GD735460.1|GD735460
genomic: TGAGGGGCCCAATGAAGGTTATGCAGAAGAAAATGGCTTGCTAGCATCCTgtaagcatac ... cttattacagCAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGA
EST: TGAGGGGCCCAATGAAGGTTATGCAGAAGAAAATGGCTTGCTAGCATCCT CAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGAEST: gi|193654451|gb|FK596571.1|FK596571
genomic: TGAGGGGCCCAATGAAGGTTATGCAGAAGAAAATGGCTTGCTAGCATCCTgtaagcatac ... cttattacagCAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGA
EST: ATGCAGAAGAAAATGGCTTGCTAGCATCCT CAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGAEST: gi|192306338|gb|FG996896.1|FG996896
genomic: ATGCAGAAGAAAATGGCTTGCTAGCATCCTgtaagcatac ... cttattacagCAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGA
EST: TGAGGGGCCCAATGAAAGTTATGCAGAAGAAAATGGCTTGCTAGCATCCT CAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGA
genomic: TGAGGGGCCCAATGAAGGTTATGCAGAAGAAAATGGCTTGCTAGCATCCTgtaagcatac ... cttattacagCAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGA
agaattaagttttttactagtgtggttaatctagaccatttatgacttattacagCAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAG
ggttaat putative branch site (score: 4)
atttatgacttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatagtaaataaaaagctgttctggatttcatagcatgaccaaatagaattaagttttttactagtgtggttaatctagaccatttatgacttattacagCAATGACAAACGAACAGCTAATGGATCATGGAAATCGGATGATGAATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - aaataaa
- - - - - - - -gctgttc
- - - - - - - - - - - - - - - - - catgacc
- - - - - - - - - - - - - - - - - - - - -aaatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattta