1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaaaaaattgaaagcaaattgtttataaaataaaatttgatggctctaaaaagttcctaatcttttatgactacatctgattgaaatcttgggatggtagTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTTGAACAAAAATTATTGGTATTGTTCTCCCTTTTAATGCATGCTCGTGGG
species | Glycine max |
transcript | GLYMA17G11330.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGC-A-AG -AGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTEST: gi|6847222|gb|AW349512.1|AW349512
genomic: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGgtaggttaat ... gggatggtagTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTT
EST: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAG T-G--CAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTEST: gi|305377790|gb|HO652021.1|HO652021
genomic: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGgtaggttaat ... gggatggtagTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTT
EST: CCAAAAGCAAGCGCAAGAG TAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTEST: gi|17153712|gb|BM143645.1|BM143645
genomic: CCAAAAGCAAGCGCAAGAGgtaggttaat ... gggatggtagTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTT
EST: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAG TAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTEST: gi|254341374|gb|GR855102.1|GR855102
genomic: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGgtaggttaat ... gggatggtagTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTT
EST: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAG T-G--CAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTEST: gi|23730638|gb|BU763406.1|BU763406
genomic: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGgtaggttaat ... gggatggtagTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTT
EST: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAG TAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTT
genomic: CATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGgtaggttaat ... gggatggtagTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTT
ctaaaaagttcctaatcttttatgactacatctgattgaaatcttgggatggtagTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTTGAACAAAAATTATTGGTATTGTTCTCCCTTTTAATGCATGCTCGTGGG
taatcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaattgaaagcaaattgtttataaaataaaatttgatggctctaaaaagttcctaatcttttatgactacatctgattgaaatcttgggatggtagTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTTGAACAAAAATTATTGGTATTGTTCTCCCTTTTAATGCATGCTCGTGGG
aaaaaaa
- - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - -tgatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - gttccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctga