1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaaattcaacaggaatatggaatgtcccctctccttatccgtttaatctgttatgcttttcatttctgatggatgaccaaggtttcttgtgtttttcagATCTTCTAAATGTTTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCGTTAATGATGAAGGA
species | Glycine max |
transcript | GLYMA17G09940.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCTCTGTATGCTTGGATGTCATTAACCAATCTTGGAGTCCAATGTTTG ATCTTCTAAATGTTTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTATCCAAEST: gi|9986587|gb|BE660695.1|BE660695
genomic: TGGCTCTGTATGCTTGGATGTCATTAACCAATCTTGGAGTCCAATGTTTGgtaagccagt ... tgtttttcagATCTTCTAAATGTTTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTATCCAA
EST: TGGCTCTGTATGCTTGGATGTCATTAACCAATCTTGGAGTCCAATGTTTG ATCTTCTAAATGTTTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTATCCAA
genomic: TGGCTCTGTATGCTTGGATGTCATTAACCAATCTTGGAGTCCAATGTTTGgtaagccagt ... tgtttttcagATCTTCTAAATGTTTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTATCCAA
aatctgttatgcttttcatttctgatggatgaccaaggtttcttgtgtttttcagATCTTCTAAATGTTTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCGTTAATGATGAAGGA
ttctgat putative branch site (score: 3)
tttcttgtgtttttc putative PPT
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaattcaacaggaatatggaatgtcccctctccttatccgtttaatctgttatgcttttcatttctgatggatgaccaaggtttcttgtgtttttcagATCTTCTAAATGTTTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCGTTAATGATGAAGGA
- - - - - - - - - - - atgtccc
- - - - - - - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatga