1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtttaagaacacagaaaagacactaactaaagatggtattcattgtcacttatcagacaacagatattagaaagctgaaatcctcttattattttattagCCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTTTAGCCAACAAAGAGACATTGATTGCTGGAGGTCCTTTTGTTCTTCCTCTTGCTCAGAAGC
species | Glycine max |
transcript | GLYMA17G09740.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGATGCAGTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAG CNAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTEST: gi|10847844|gb|BF070458.1|BF070458
genomic: CAGATGCAGTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAGgtaagcctct ... attttattagCCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCT
EST: CAGATGCAGTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAG CCAACACTTGCTGCGATAGAAGCAGGGAAATACATAGCTTTAGCCAACAAAEST: gi|254348363|gb|GR852042.1|GR852042
genomic: CAGATGCAGTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAGgtaagcctct ... attttattagCCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTTTAGCCAACAAA
EST: CAGATGCAGTCAGTGTAGTCACAGGAATAGTAG-CTGTGCAGGACTGAAG CCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTT-AGCCAACAAAEST: gi|254316858|gb|GR828395.1|GR828395
genomic: CAGATGCAGTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAGgtaagcctct ... attttattagCCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTTTAGCCAACAAA
EST: CAGATGCAGTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAG CCAACAGTTGCTGCGATAGAAGCAGG-AAATACATAGCTTTAGCCAACAAA
genomic: CAGATGCAGTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAGgtaagcctct ... attttattagCCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTTTAGCCAACAAA
tcacttatcagacaacagatattagaaagctgaaatcctcttattattttattagCCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTTTAGCCAACAAAGAGACATTGATTGCTGGAGGTCCTTTTGTTCTTCCTCTTGCTCAGAAGC
tcctcttattatttt CT-rich tract
aaatcctcttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaagaacacagaaaagacactaactaaagatggtattcattgtcacttatcagacaacagatattagaaagctgaaatcctcttattattttattagCCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTTTAGCCAACAAAGAGACATTGATTGCTGGAGGTCCTTTTGTTCTTCCTCTTGCTCAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - agaaaaga
- - - - - - - - - - cactaac
- - - - - - - - - - - - - - - -gatggta
- - - - - - - - - - - - - - - - - - - - - -tgtcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgaa