1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcggtttgataatacctttattttaagattgtgtatgcttatatacctgtagacaattattttggtaatcgtgcttgagctatgtcagGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTACGTGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTCAATGAAT
species | Glycine max |
transcript | GLYMA17G09020.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAG GTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTAEST: gi|254319525|gb|GR829037.1|GR829037
genomic: GAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAGgtcggtttga ... gctatgtcagGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTA
EST: GAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAG GTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTAEST: gi|51334752|gb|CO978618.1|CO978618
genomic: GAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAGgtcggtttga ... gctatgtcagGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTA
EST: GAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAG GTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTA
genomic: GAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAGgtcggtttga ... gctatgtcagGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTA
tatgcttatatacctgtagacaattattttggtaatcgtgcttgagctatgtcagGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTACGTGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTCAATGAAT
aattattttggtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtttgataatacctttattttaagattgtgtatgcttatatacctgtagacaattattttggtaatcgtgcttgagctatgtcagGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTACGTGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTCAATGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG