1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctaggctattgttttagactgatgtgcttccaatgatattttacatttattcttaatgaattgtgacaaggatgattgaaattcttttctcttttcagTTCTGCTAATGACAGAGATGATGATGATATTGCTGAATTCCGGAAATGCATTCGTGTATTAGCTGATAGAGTTGGTTTCTTATCTAAGCACCGGGAAGAG
species | Glycine max |
transcript | GLYMA17G07920.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTTTTGCAGATTCCCTACGTAATTTGGCGCAATCTTTGGCCAA TTCTGCTAATGACAGAGATGATGATGATATTGCTGAATTCCGGAAATGCATEST: gi|120495909|gb|EH224076.1|EH224076
genomic: GCTGGTTTTGCAGATTCCCTACGTAATTTGGCGCAATCTTTGGCCAAgtaattttct ... ctcttttcagTTCTGCTAATGACAGAGATGATGATGATATTGCTGAATTCCGGAAATGCAT
EST: GTGGCTGGTTTTGCAGATTCCCTACGTAATTTGGCGCAATCTTTGGCCAA TTCTGCTAATGACAGAGATGATGATGATATTGCTGAATTCCGGAAATGCAT
genomic: GTGGCTGGTTTTGCAGATTCCCTACGTAATTTGGCGCAATCTTTGGCCAAgtaattttct ... ctcttttcagTTCTGCTAATGACAGAGATGATGATGATATTGCTGAATTCCGGAAATGCAT
catttattcttaatgaattgtgacaaggatgattgaaattcttttctcttttcagTTCTGCTAATGACAGAGATGATGATGATATTGCTGAATTCCGGAAATGCATTCGTGTATTAGCTGATAGAGTTGGTTTCTTATCTAAGCACCGGGAAGAG
tcttaat putative branch site (score: 3)
ttcttttctcttttc putative PPT
attcttaatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctaggctattgttttagactgatgtgcttccaatgatattttacatttattcttaatgaattgtgacaaggatgattgaaattcttttctcttttcagTTCTGCTAATGACAGAGATGATGATGATATTGCTGAATTCCGGAAATGCATTCGTGTATTAGCTGATAGAGTTGGTTTCTTATCTAAGCACCGGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA