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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaatatctgcaagtatatttatcattttaccaccaaaatttaccagtgttgcctagaatatacagtaacattcactctgccaattttacagCCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATATGGAGTTTGGGACTAATATTACTTGAGTGTGCTTTGGGTCGGTTTCCAT

Basic information

species Glycine max
transcript GLYMA17G06020.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024620|gb|CX711361.1|CX711361
EST:     GTACATCTGGTCAAGCAAATACTTTCATTGGAACCTGCAACTATATGTCT                         CCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATA
genomic: GTACATCTGGTCAAGCAAATACTTTCATTGGAACCTGCAACTATATGTCTgtgagtaata ... aattttacagCCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATA
EST: gi|23052983|gb|BU577474.1|BU577474
EST:     GTACATCTGGTCAAGCAAATACTTTCATTGGAACCTGCAACTATATGTCT                         CCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATA
genomic: GTACATCTGGTCAAGCAAATACTTTCATTGGAACCTGCAACTATATGTCTgtgagtaata ... aattttacagCCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATA
EST: gi|58017683|gb|CX704425.1|CX704425
EST:     GTACATCTGGTCAAGCAAATACTTTCATGGGAACCTGCAACTATATGTCT                         CCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATA
genomic: GTACATCTGGTCAAGCAAATACTTTCATTGGAACCTGCAACTATATGTCTgtgagtaata ... aattttacagCCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATA
EST: gi|192334427|gb|FK024442.1|FK024442
EST:     GTACATCTGGTCAAGCAAATACTTTCATTGGAACCTGCAACTATATGTCT                         CCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATA
genomic: GTACATCTGGTCAAGCAAATACTTTCATTGGAACCTGCAACTATATGTCTgtgagtaata ... aattttacagCCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttaccagtgttgcctagaatatacagtaacattcactctgccaattttacagCCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATATGGAGTTTGGGACTAATATTACTTGAGTGTGCTTTGGGTCGGTTTCCAT
                          cagtaac  putative branch site (score: 2)
                 tagaatata  TA-rich tract