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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaaatatctatatatatatgtatatgagttctctgttacaatgcatgccagagtatttgtttcaattactaagaaaatacacatgattgcactttctttggtacagGCAACATTAGCACCCCCAGTAAAAGGGAAGATGCTCAAAAGTCTCTGTGTTTGTTTTGTTGTAGTTCTCTTCAGTTTTTTTACTGTAGCCATTTCTGGCT

Basic information

species Glycine max
transcript GLYMA17G05360.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396949|gb|EV266822.1|EV266822
EST:     TTCCCATCATTGCCACAACTTATGGTAGCGGAATAATTCCAGAAATTCAG                         GCAACATTAGCACCCCCAGTAAAAGGGAAGATGCTCAAAAGTCTCTGTGTT
genomic: TTCCCATCATTGCCACAACTTATGGTAGCGGAATAATTCCAGAAATTCAGgtttgaaata ... tttggtacagGCAACATTAGCACCCCCAGTAAAAGGGAAGATGCTCAAAAGTCTCTGTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatttgtttcaattactaagaaaatacacatgattgcactttctttggtacagGCAACATTAGCACCCCCAGTAAAAGGGAAGATGCTCAAAAGTCTCTGTGTTTGTTTTGTTGTAGTTCTCTTCAGTTTTTTTACTGTAGCCATTTCTGGCT
                                      cactttcttt  CT-rich tract
 aattactaagaaaata  TA-rich tract