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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcgctagtgatctgatctatgtagtgaaatgttgcttgaaattaactttatttaatttttttttgaaataccattttccatttacaagagggtcgaattactgaactttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAAC

Basic information

species Glycine max
transcript GLYMA17G05130.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05130.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0016g00530.t01 (Vitis vinifera), 3'ss of exon 6
gtacatcgctagtgatctgatctatgtagtgaaatgttgcttgaaattaactttatttaatttttttttgaaataccattttccatttacaagagg-gtcgaattactgaactttg-tgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAAC
|||| |   | || |  | || |||  | |||| ||||  |    ||    |  ||||  | || ||     | | ||||   |      | | || | | || |  |||   | | || ||||| | ||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||
gtacgttatt-gtcaagttatgtattaaatgaa-tgttcttctggat---gtggatttcttgttcttccaggagatcattgaactgaagtatgtggagcctaactgttgagtctcggtgtagGACATGGAATACTACAATAAATTGGAAGACCCAACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231340|gb|BE800228.1|BE800228
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|192322757|gb|FK014448.1|FK014448
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|254345030|gb|GR855687.1|GR855687
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|6070770|gb|AW100157.1|AW100157
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|298179386|gb|HO027857.1|HO027857
EST:     GAGCATGTGAAGGATCGATTGCGTGCTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|14259415|gb|BG882323.1|BG882323
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaaataccattttccatttacaagagggtcgaattactgaactttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAAC
                   atttacaa  TA-rich tract