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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgaaattctccaacaggtcattttcattctagttctgttctactactgggttagttgcgggtatctaatttggtgactattattttctcattcggttttccatttggacgacttgatctcgtgcagGTTGATGACACCCTAGACTTGTTCAACGAGCTACAGTTGCAGCATCAAGCAGTAGCTACAAAGACTAAAACACTTCATGATGCATGTGACAGGCTG

Basic information

species Glycine max
transcript GLYMA17G04990.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04990.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G73430.2 (Arabidopsis thaliana), 3'ss of exon 6
gtgatgaaattctccaacaggtcattttcattctagttctgttctactactgggttagttgcgggtatctaatttggtgactattattt-tctcattcggttttccatttggacgacttgatctcgtgcagGTTGATGACACCCTAGACTTGTTCAACGAGCTACAGTTGCAGCATCAAGCAGTAGCTACAAAGACTAAAACACTTCATGATGCATGTGACAGGCTG
                 ||||   ||||||  | |||| | |   | | |||   | ||      |||||         | ||| |    |||  |||  | ||  | ||||  || ||  ||  | |||||||||||| || || ||| | || ||||| || ||| | || ||||||| |||| | |||||||||||||| |||||||| ||||||||| | |||
----------------gcagg---ttttcaa-caagttttatga-attgctg---tggtct----tatcttgccaataaattataacacgtctgcttcattattgaacttgg--gatttc-tcctgcgcagGTTGATGAAACACTTGACCTATTTAACGAACTGCAGCTACAACATCAAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTG

upper sequence: GLYMA17G04990.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 3'ss of exon 6
gtgatg--aaattctccaacaggtcatt--ttcattctagttctgttctactactgggttagttgcgggtatc--taatttggtg-actattattttctcattcggttttccatttggacgacttgatctcgtgcagGTTGATGACACCCTAGACTTGTTCAACGAGCTACAGTTGCAGCATCAAGCAGTAGCTACAAAGACTAAAACACTTCATGATGCATGTGACAGGCTG
|| ||   || ||     | || ||| |  ||  |   |  ||| |   | |  |   | |||||    | |   |||||||| | || |||  |  ||| |    |     || ||  | ||    | |  ||||||| ||||  ||||| ||||| || || || |||||  ||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| |  ||
gtaattttaagtttgttcaaagctcagtggtttttctaaaatctctatcaattttatctcagttgatccttttggtaatttggagtaccattcatgcctcttaaaat-----atctgagctacc---ttttatgcagGTGGATGCTACCCTTGACTTATTTAATGAACTACAACTGCAGCACCAAGCAGTAGCAACAAAGACTAAAACTCTTCATGATGCTTGTGACCGATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgactattattttctcattcggttttccatttggacgacttgatctcgtgcagGTTGATGACACCCTAGACTTGTTCAACGAGCTACAGTTGCAGCATCAAGCAGTAGCTACAAAGACTAAAACACTTCATGATGCATGTGACAGGCTG
                                       acttgat  putative branch site (score: 5)
      tattattttctcatt  TA-rich tract