1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaagccttattcttctataatatgctttctacttagacaaagttatgaacaagtaatcaattggctgacattttttaatattggattttgtctggacagATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCACAAG
species | Glycine max |
transcript | GLYMA17G04930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTG ATGGATCAGATACTTGCTGCATEST: gi|151411775|gb|EV281586.1|EV281586
genomic: ATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTGgtaagccaac ... gtctggacagATGGATCAGATACTTGCTGCAT
EST: ATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTG ATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCCEST: gi|192329503|gb|FK021873.1|FK021873
genomic: ATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTGgtaagccaac ... gtctggacagATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCC
EST: ATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTG ATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCCEST: gi|192309249|gb|FG999462.1|FG999462
genomic: ATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTGgtaagccaac ... gtctggacagATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCC
EST: ATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTG ATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCC
genomic: ATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTGgtaagccaac ... gtctggacagATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCC
atgaacaagtaatcaattggctgacattttttaatattggattttgtctggacagATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCACAAG
ttttaat putative branch site (score: 3)
ttttgtct putative PPT
acattttttaatattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaagccttattcttctataatatgctttctacttagacaaagttatgaacaagtaatcaattggctgacattttttaatattggattttgtctggacagATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG