1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactcatacctaataaactactttggcattcccccctctcaaattttattttatttaatttatttattaattaatatcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTATCTCACGAGACATAGCAAAATTTATTGTCCATGCCCACCAAGAAAGAA
species | Glycine max |
transcript | GLYMA17G04230.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTEST: gi|105633397|gb|DW246760.1|DW246760
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: ACATCAGTGAGGAG GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTEST: gi|21479921|gb|BQ576604.1|BQ576604
genomic: ACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTEST: gi|254323158|gb|GR835766.1|GR835766
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTEST: gi|18692808|gb|BM521656.1|BM521656
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTEST: gi|254323159|gb|GR835767.1|GR835767
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTEST: gi|11688853|gb|BF596529.1|BF596529
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
cccccctctcaaattttattttatttaatttatttattaattaatatcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTATCTCACGAGACATAGCAAAATTTATTGTCCATGCCCACCAAGAAAGAA
tcatttt CT-rich tract
tcaaattttattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcatacctaataaactactttggcattcccccctctcaaattttattttatttaatttatttattaattaatatcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTATCTCACGAGACATAGCAAAATTTATTGTCCATGCCCACCAAGAAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA