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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagataaaaaaacataactgatgtgttactccattctccttccctttccattggatgaaaaacttaaaattggcttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA

Basic information

species Glycine max
transcript GLYMA17G03920.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G139894_T01 (Zea mays), 3'ss of exon 6
gtagataaaaaaacataactgatgtgttactccattctccttccctttccattggatgaaaaacttaaaattggcttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA
||| ||   | |   ||  |  | |  |    | |||    ||  |||   ||||   ||   | || |  || |||  ||    |||||| |||||  |||| |||||||| |||||||| || || || ||| |||| ||||| || ||||| ||| |||||||||||||||||||||||||||||
gtaaatggcacagtttactttgtatcctttagc-ttcatgatcaatttgatttggtctaatgtcctaca--tgcctttgtt----cagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACGATCTGGTGTATTCCCTCAGCTGCAGCAGGTGAAGTATGACTGTAACAAA

upper sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 5
gtagataaaaaaacataact-gatgtgttactccattctccttccctttccattggatgaaaaacttaaaattggcttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA
|||  |   ||| |||     |||   || |  | |  |     ||| |   |||| |   ||  | |  | ||  |  |      ||||||||| || ||||| || ||||| || ||||||||||| |||||| |||||||||| || ||||| ||||| |||||||| ||||||||||| ||||||
gtaacttggaaatcattgtcagatactttgcatcttattaaagtcctat---ttgggttccaagttcaccaatgtttggtgctttccagGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193355308|gb|FK319893.1|FK319893
EST:     TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAG                         GCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
genomic: TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagataaaa ... tttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
EST: gi|193421433|gb|FK388724.1|FK388724
EST:     TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAG                         GCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
genomic: TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagataaaa ... tttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
EST: gi|193410920|gb|FK376403.1|FK376403
EST:     TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAG                         GCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
genomic: TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagataaaa ... tttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctccttccctttccattggatgaaaaacttaaaattggcttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA
                                         cttcttt  CT-rich tract
                      atgaaaaacttaaaat  TA-rich tract