1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtccattcatccctttctttggacctagaatattttcacatgcttgtatagttgtttgtaattttccgttgtgaataaatcaatttttctcacgtgtttctaatctaatgctcacagCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCTCTAGACAACATTCCTGTCTAGAACAAATCCTTTCTGACTGAAGTTGCCA
species | Glycine max |
transcript | GLYMA17G03380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCCTGAGCATTATGGGCAGGAGGATCTGATGACTGCACTTCTAAAACAG CAAGAAGGCATGGGACCAGCTGAAAATGAGTTTGAATTTGATGGATATTCTEST: gi|6072032|gb|AW101479.1|AW101479
genomic: TCCCTGAGCATTATGGGCAGGAGGATCTGATGACTGCACTTCTAAAACAGgtttgtccat ... atgctcacagCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCT
EST: CTGCACTTCTAAAACAG CAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCTEST: gi|151395593|gb|EV265470.1|EV265470
genomic: CTGCACTTCTAAAACAGgtttgtccat ... atgctcacagCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCT
EST: TCCCTGAGCATTATGGGCAGGAGGATCTGATGACTGCACTTCTAAAACAG CAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCT
genomic: TCCCTGAGCATTATGGGCAGGAGGATCTGATGACTGCACTTCTAAAACAGgtttgtccat ... atgctcacagCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCT
tttccgttgtgaataaatcaatttttctcacgtgtttctaatctaatgctcacagCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCTCTAGACAACATTCCTGTCTAGAACAAATCCTTTCTGACTGAAGTTGCCA
tgaataaatcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccattcatccctttctttggacctagaatattttcacatgcttgtatagttgtttgtaattttccgttgtgaataaatcaatttttctcacgtgtttctaatctaatgctcacagCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCTCTAGACAACATTCCTGTCTAGAACAAATCCTTTCTGACTGAAGTTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG