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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcaatgacaaatttgtctgttctgtcgatttttttttaattaaattgtctgactgcattcataaattcttgattgttaagtattgtgtttgataatcagGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTCAGTTATAGTCCAT

Basic information

species Glycine max
transcript GLYMA17G02720.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02720.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0020g01650.t01 (Vitis vinifera), 3'ss of exon 6
tgcaatgacaaatttgtctgttctgtcgatttttttttaattaaattgtctgactgcattcataaattcttgattgt-taagtattgtgtttgataatcagGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTCAGTTATAGTCCAT
|    |||   | ||   ||   | | | | | |   |   |   ||   ||| |   ||| |   || |      | | |   |  | | |||| ||||||| ||||| |  |||||||| ||| | || |||||| | |||||||||||  |  |||||||||||||||| || |||||| |||| |||||||||||||
tatgctgattcactttcatggcat-ttgttctatacatgcgtgtgttaattgaatatcttcttgtcttgtcatgcatctgaccttcttatatgattatcagGGTGCACCCCAATGCACTCACTATGCACAACGTGGAATATGCAAGTTTGGGCCCACATGCAAATTTGATCACCCAATGGGAACACTGAGTTATAGTCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193645446|gb|FK590414.1|FK590414
EST:     TTCCATTGCGTCCG                         GGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGT
genomic: TTCCTTTGCGTCCGgtaatttcaa ... tgataatcagGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctgactgcattcataaattcttgattgttaagtattgtgtttgataatcagGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTCAGTTATAGTCCAT
            attcataaattctt  TA-rich tract