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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttgttcatttgccaatcctgctagcaaatttgtgtcctttattttgttacttaatataaccttgggagtatattaacagGTACGGAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTC

Basic information

species Glycine max
transcript GLYMA17G02220.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02220.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G19010.1 (Arabidopsis thaliana), 3'ss of exon 5
gtctgttgttcatttgccaatcctgctagcaaatttgtgtcctttattttgttacttaatataaccttgggagtatattaacagGTACGGAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTC
|| |||  | | ||   |||| ||   ||||   |||| || ||| ||   | | ||  | | ||  ||          |||||||  |||| ||||||||||| ||||||||||| |||||| | |||||||||||  ||||||| || || ||||| ||  ||   || || ||||||||||
gtatgtgttcctttccacaatgct-taagca---ttgtttctttttttggctgaatt--tcttacactga---------aacagGTTAGGAACGAGAAAGCTCGAAGATACTTGAGCAGCATGAGGAAGAAGAAGCCTATTCCTTTTTCACATAAGTTCCCACATACTGATCCTCTTGCTCTTC

upper sequence: GLYMA17G02220.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------gtctgttgttcatttg----ccaatcc-tgctagcaaatttgtgtcctttattttgttacttaatataaccttgggagtatattaacagGTACGGAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTC
                        | |  | |||| ||     ||| | | ||  |     | | ||   |   |    ||  ||  |  |   ||||   |||     |||||||| |||||||| ||||||||||| || || |||||||| ||||| |||||  |||| || ||||| || || || |||| ||| |||||||| || |
gtctgtttcctatgataaactggttttactattcactttggttccattgcatgtcactgtgtctatgcgatagttcgctttgtttgctcaactattggtcttatgaggtcagGTACGCAATGAGAAGGCTCGGAGATATTTAAGCAGCATGCGGAAGAAAAAGCCCATTCCCTTGTCCCAGAAATTCCCAAATGCAGATCCCCTTGCACTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatttgtgtcctttattttgttacttaatataaccttgggagtatattaacagGTACGGAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTC
                             atataac  putative branch site (score: 3)
             tttattttgttactta  TA-rich tract