1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaataatttttgcaatgctttgttataaaaaatgatcacttagaagttagaaaagacatctaagcttttaaatgcctgttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACACTGGCTGTGCGGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAAC
species | Glycine max |
transcript | GLYMA17G00740.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGANG AA-CATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTEST: gi|254340112|gb|GR858237.1|GR858237
genomic: CAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGA-Ggtaataattt ... ttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGT
EST: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACAEST: gi|18735074|gb|BM528549.1|BM528549
genomic: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAGgtaataattt ... ttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
EST: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACAEST: gi|11412572|gb|BF424583.1|BF424583
genomic: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAGgtaataattt ... ttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
EST: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACAEST: gi|208086408|gb|GD879442.1|GD879442
genomic: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAGgtaataattt ... ttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
EST: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACAEST: gi|151404558|gb|EV274372.1|EV274372
genomic: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAGgtaataattt ... ttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
EST: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATCAGTACAEST: gi|193581902|gb|FK533187.1|FK533187
genomic: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAGgtaataattt ... ttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
EST: GTATCAGGGCATGTAGCTCCATGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACAEST: gi|213607081|gb|DB966986.1|DB966986
genomic: GTATCAGGGCATGTAGCTCCATGTGAGgtaataattt ... ttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
EST: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAG AAACATCCTGGGAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACAEST: gi|192317031|gb|FK007826.1|FK007826
genomic: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAGgtaataattt ... ttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
EST: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
genomic: CCAAGAGATCAGAAATCCTGAATGTATCAGGGCATGTAGCTCCATGTGAGgtaataattt ... ttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
gatcacttagaagttagaaaagacatctaagcttttaaatgcctgttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACACTGGCTGTGCGGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAAC
ttttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatttttgcaatgctttgttataaaaaatgatcacttagaagttagaaaagacatctaagcttttaaatgcctgttggtaatagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACACTGGCTGTGCGGGATAAGTTGTTGATTGCTGGGGGGTTTCAAGGAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA