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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatatgcaattggtaataaatttgctttcttatttctcactttgggtcggttttgattagGTTATGAGCAGGCATTCTTGGAAAGGCCAAGCAGCACAGCCTAAGGTTAAGTATTTCACTCAGGTCAAGGCCCGGCCACCTACATTTGTTGC

Basic information

species Glycine max
transcript GLYMA17G00640.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00640.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0022g01890.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------gtaaaatatgcaattggtaataaatttgctttcttatttctcactttgggtcggttttgattagGTTATGAGCAGGCATTCTTGGAAAGGCCAAGCAGCACAGCCTAAGGTTAAGTATTTCACTCAGGTCAAGGCCCGGCCACCTACATTTGTTGC--------
                                 || |      ||   || |||  || | || ||||  || |  | | || |   ||||||||||||||||||||||||||||  || || ||||| || ||| | ||||| ||||| ||||| ||||| ||||| || || ||||||||        
gtcagtatgacaataatccctttagtcctgcccatccttcaaatatgcaagttgggttttaatctctc-tttcgctttgcttctctctagGTTATGAGCAGGCATTCTTGGAAAGATCAGGCTGCACAACCCAAGATCAAGTACTTCACCCAGGTGAAGGCTCGGCCCCCAACTTTTGTTGCCTTTATGG

upper sequence: GLYMA17G00640.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0035g02010.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------gtaaaatatgcaattggtaataaatttgctttcttatttctcactttgggtcggttttgattagGTTATGAGCAGGCATTCTTGGAAAGGCCAAGCAGCACAGCCTAAGGTTAAGTATTTCACTCAGGTCAAGGCCCGGCCACCTACATTTGTTGC--------
                                  || |      ||   || |||  || | || | ||  ||      | || |   ||||||||||||||||||||||||||||  || || ||||| || ||| | ||||  ||||| ||||| ||||| ||||| || || ||||||||        
gtaagtatgacaataatctcttttagtcctgcccatccttcaaatatgtaagttgggttttaatctgtc-tttcactctgcttctctctagGTTATGAGCAGGCATTCTTGGAAAGATCAGGCTGCACAACCCAAGATCAAGTGCTTCACCCAGGTGAAGGCTCGGCCCCCAACTTTTGTTGCCTTTATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaattggtaataaatttgctttcttatttctcactttgggtcggttttgattagGTTATGAGCAGGCATTCTTGGAAAGGCCAAGCAGCACAGCCTAAGGTTAAGTATTTCACTCAGGTCAAGGCCCGGCCACCTACATTTGTTGC
                            ttctcac  putative branch site (score: 2)
        taataaatttgctttc  TA-rich tract