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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctcgaaagacatttccgtctttggcattttatttctatcgcctgaaccgaacacactggaagtgagtttatttatttattcggttattccgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAATGACGTAAATATTGGTTTTCATACTCTAGTGTGATGGGAATTGTCTGG

Basic information

species Glycine max
transcript GLYMA17G00250.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396313|gb|AI495310.1|AI495310
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTC
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTC
EST: gi|151409763|gb|EV279571.1|EV279571
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|254326666|gb|GR832818.1|GR832818
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|298184274|gb|HO029487.1|HO029487
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAAC
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAAC
EST: gi|298166707|gb|HO010146.1|HO010146
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|192300665|gb|FG991077.1|FG991077
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|192326423|gb|FK015925.1|FK015925
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|298178229|gb|HO023964.1|HO023964
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|7795909|gb|AW781306.1|AW781306
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTAT
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTAT
EST: gi|58022692|gb|CX709433.1|CX709433
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: gi|15286015|gb|BI469906.1|BI469906
EST:     CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG                         GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccgaacacactggaagtgagtttatttatttattcggttattccgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAATGACGTAAATATTGGTTTTCATACTCTAGTGTGATGGGAATTGTCTGG
                                       ttattcc  CT-rich tract
                      tttatttatttattcg  TA-rich tract