1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caattcttgggctcagcgatagaactcatttgatttatataaatagttgagattttatgaaattttattcattctaatgctgtgtcttccttgtctgtagGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTAACAGATTGGAGTAGTGTATTTTATTCTGTGATATACACATCTATCCCTACTATCGTTGTT
species | Glycine max |
transcript | GLYMA16G34610.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTCTGTACAACTTCTACCGAAATGCTGTCTTTGTGTTGATGCTATTCTG GTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTAACAGATTGGAGEST: gi|192332082|gb|FK026348.1|FK026348
genomic: ATTCTGTACAACTTCTACCGAAATGCTGTCTTTGTGTTGATGCTATTCTGgtatgtatag ... ttgtctgtagGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTAACAGATTGGAG
EST: ATTCTGTACAACTTCTACCGAAATGCTGTCTTTGTGTTGATGCTATTCTG GTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTAACAGATTGGAG
genomic: ATTCTGTACAACTTCTACCGAAATGCTGTCTTTGTGTTGATGCTATTCTGgtatgtatag ... ttgtctgtagGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTAACAGATTGGAG
gttgagattttatgaaattttattcattctaatgctgtgtcttccttgtctgtagGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTAACAGATTGGAGTAGTGTATTTTATTCTGTGATATACACATCTATCCCTACTATCGTTGTT
ttctaat putative branch site (score: 2)
tgtcttccttgtct putative PPT
attttatgaaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattcttgggctcagcgatagaactcatttgatttatataaatagttgagattttatgaaattttattcattctaatgctgtgtcttccttgtctgtagGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTAACAGATTGGAGTAGTGTATTTTATTCTGTGATATACACATCTATCCCTACTATCGTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtgt