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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttggaattttgtcctatttattatctttgaatattcattctcgttttgcttcaactttgaatttttattttgttatgattcagATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAATTCTATTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTATGGGCAATAG

Basic information

species Glycine max
transcript GLYMA16G34350.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 5
----gtatgttggaattttgtcctatttattatctttgaatattcattctcgttttgcttcaactttgaatttttattttgttatgatt-cagATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAATTCTATTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTATGGGCAATAG
     ||      ||  ||  ||| |  |||    |      | ||||    ||    || || |||   |        |  | | | | ||||||||||  ||| |||| ||||||||  | |||||  ||||| | ||||||||||||||  | || |||||||||||||||||||||| |||||||||||
gtagctaccagcaaacatttccctgtcgatttcagtatttcttacattagaattccatttgaaatttttctcagccaaatagtgtcactgcagATGTATGGAGAGCTGCAGGTGCTTTCATCCCTTGTACCTACTCGGGAATTCTATTTCCTCAGATATTGTCAACAAATTGAACAAGGCTCATGGGCAATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatattcattctcgttttgcttcaactttgaatttttattttgttatgattcagATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAATTCTATTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTATGGGCAATAG
                                       ttttgtt  CT-rich tract
                        aactttgaatttttat  TA-rich tract