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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcttccaatccctcttatccctctatgcaatatgcatttccttgtctttttctggcttcagtgttgctgatagtatttttgtatttttgttatagGCAGCAAGATTTGCTGAAGAAAGTCGTTGAGATTAAACCTAAGCGGCCAAGATGTGATAGCAATCAGTCAACCCCTGCTAGTAATGCTCCTGTTACAAAT

Basic information

species Glycine max
transcript GLYMA16G33570.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33570.2 (Glycine max), 3'ss of exon 5
lower sequence: AT1G73350.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaaatcttccaatccctcttatccctctatgcaatatgcatttccttgtctttttctggcttcagtgttgctgatagtatttttgtatttttgttatagGCAGCAAGATTTGCTGAAGAAAGTCGTTGAGATTAAACCTAAGCGGCCAA-GATGTGATAGCAATCAGTCAACCCCTGCTAGTAATGCTCCTGTTACAAAT---
||  |   |||  ||| |   | || | |   ||  ||| |||   || || ||   || |  ||   ||  ||   || ||||   || | |     ||||||||||||||||||| |||||| || ||| |||||||||| || |||| ||| | |   | ||||   | |||  |||  |  | | ||||||| || |   
gtggaaaatcccttcctttcca-ccttattcacaccatgaattggattttcattcggtgac--caacttttgtgt--gtgttttccaatgtct-----agGCAGCAAGATTTGCTGAGGAAAGTTGTAGAGGTTAAACCTAAACGTCCAAAGATCTCAACACCATCA---AGCCCAAGCTTATC-TCCCCCTGTTAGAAGTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtctttttctggcttcagtgttgctgatagtatttttgtatttttgttatagGCAGCAAGATTTGCTGAAGAAAGTCGTTGAGATTAAACCTAAGCGGCCAAGATGTGATAGCAATCAGTCAACCCCTGCTAGTAATGCTCCTGTTACAAAT
                        tgctgat  putative branch site (score: 3)
                                           tttttgtt  putative PPT
                           tgatagtatttttgta  TA-rich tract