Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatttggctcattttctatttttatttcaacatggaaagttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC

Basic information

species Glycine max
transcript GLYMA16G33230.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33230.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatttggctcattttctatttttatttcaacatgg---aaagttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC
                                      || |    ||  ||   ||| | ||||  | |  |  |  | |    |    || |    || ||  | || |  |     ||| ||| || |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || || || || || |  |||||  | || |||||||| || |||||  | |
-------------------------------------gtttgtacataaaatc--catccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgtttt-cagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: GLYMA16G33230.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatttggctcattttctatttttatttcaacatggaaagttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC
                                      || |   || ||  |   |||   ||  || ||| |  |    |||  ||| || |   ||| ||  || ||    ||  | || ||| |||||||| |||||||||||||||||||| ||||| || |||||||| || || || || || || |  |  ||  | |||||| | || ||||| |||   |
-------------------------------------gtttggtgcttggtatcagatg---ttatcttattatgcaaacatataacaaaatagct-gttagtaatactc-tagttgacttggctt-cagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: GLYMA16G33230.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatttggctcattttctatttttatttcaacatg-gaaagttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC
                              ||   |  ||| |       |  |   |    |||  |||  |||||  |   |   | | || | ||  ||   ||  |   || |  | ||   | |||||||| |||||| ||||||| |||||||||||||| ||||| || || || ||||| || || |  || ||  | |||||| |||| |  ||||| || |
------------------------------gtcagttcttcacagtggaaacctgttt---cttgaatcacattctaccta-gtgagatcttgtgtaacctgaatctggt---taatcacatg---tgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: GLYMA16G33230.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatt----tggctcat-----tttctatttttatttcaac-atggaaagttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC
|||||||||  |  | ||  | |  || |  |  ||||||      ||  ||  |||  ||||    ||| ||||     |   ||  || ||| |||   ||    | |  || |    | |  || ||  ||  ||||||||| |||||||||||||| ||||||||||||||||||||||| || || || || || || ||||| || || |||||||||||||| ||||||||||
gtttgcttcactcacccagttgatctgttcatgcttcttt--ttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgcc-atcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

upper sequence: GLYMA16G33230.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------------------gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatt---tggctcatt--ttctatttttatttcaacatggaa---agttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC
                          |   | || | ||| |  | ||  ||   | |||  | |   | |   ||    |  | |   | | ||  |  ||    ||| |||    | | |     | |  |    |||      | | |  |||| ||||| ||  | ||||||||||| ||||||||||| || |||||||| ||||| ||||| || || |  ||||| || || ||| | || || |||||||  |
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004318|gb|DB985028.1|DB985028
EST:     CAGTCAAGGATTACATTGTGACAGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|192304937|gb|FG997091.1|FG997091
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|120494936|gb|EH223103.1|EH223103
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|7326385|gb|AW620194.1|AW620194
EST:     TCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: TCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|23729062|gb|BU762613.1|BU762613
EST:     CAGTCAAGGATTACATTGACTCGGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|7028301|gb|AW458084.1|AW458084
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|151396319|gb|EV266196.1|EV266196
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCGAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|192303929|gb|FG995243.1|FG995243
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTA
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTA
EST: gi|37994367|gb|CF806113.1|CF806113
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|7639366|gb|AW733690.1|AW733690
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|193518116|gb|FK476989.1|FK476989
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|21639077|gb|BM140123.1|BM140123
EST:     CAGTCAAGGATTACATTGACTCGGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|192303930|gb|FG995244.1|FG995244
EST:     CAGTCAAGGATTACATTGACTTTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|208328152|gb|GE127476.1|GE127476
EST:     CAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|193449304|gb|FK412041.1|FK412041
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|192295866|gb|FG992647.1|FG992647
EST:     CAGTCAAGGATTACATTGACTTTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|192305016|gb|FG996134.1|FG996134
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|23726767|gb|BU761386.1|BU761386
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|58025435|gb|CX712176.1|CX712176
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|192326432|gb|FK017704.1|FK017704
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|7284851|gb|AW597338.1|AW597338
EST:     TCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: TCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|58015115|gb|CX701857.1|CX701857
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|58022174|gb|CX708915.1|CX708915
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|13788927|gb|BG651518.1|BG651518
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|192295865|gb|FG992646.1|FG992646
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAG-TTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
EST: gi|58022463|gb|CX709204.1|CX709204
EST:     CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAG                         GGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTCCTCCTAAGACAGgtttgcttct ... tgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttttatttcaacatggaaagttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC
                           tgctaat  putative branch site (score: 2)
                                    ctattttcctgtctt  putative PPT
     ttatttcaa  TA-rich tract