Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccatttgacacattcaaaagcaagtttgtggagcatgaacaatcccattcgcacgcttaatgatttgatttatttactaattgtaacctattttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTTGCAAATGATCCAGACCAAGCTGCACTGCTAAAGGTGAAGGAAATTAAAA

Basic information

species Glycine max
transcript GLYMA16G33030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33030.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0089g01170.t01 (Vitis vinifera), 3'ss of exon 6
ccatttgacacattcaaaagcaagtttgtggagcatgaacaatcccattcgcacgctta--atgatttgatttatttactaattgtaacctattttga-acagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTTGCAAATGATCCAGACCAAGCTGCACTGCTAAAGGTGAAGGAAATTAAAA
  |   || |   | || |     ||     | |||  |  |       |  |    ||  || | | |   |||   || ||| |      |||||    || |||| || ||||| ||||| ||||||||||| ||||| ||  |||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |
--aaacga-attcttaatattgcattaagtcaacattcattagtatgcccaaagatgtagcatcactggtcatatgatctcattattggtctttttgctgtagGATTTGGAGGACAAGCTTCACCCAGGTGGTCCTTTTGATCCTCTGGGGCTTGCAAATGACCCAGACCAGGCTGCACTGCTTAAGGTGAAGGAGATTAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31311401|gb|CD396604.1|CD396604
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTTATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31458462|gb|CD400490.1|CD400490
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACCAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|6727027|gb|AW311381.1|AW311381
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|8670480|gb|BE191587.1|BE191587
EST:     GATTGTTCTTGTGGGAGGCGCATAGTACTACAGAATTATTAATGGCCATG                         A-TGTCGAAGACAAACTACATCCAGGTGG
genomic: GATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCC-TGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGG
EST: gi|209725349|gb|BW658247.1|BW658247
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|5753052|gb|AI960339.1|AI960339
EST:     CTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: CTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209710534|gb|BW662070.1|BW662070
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|11414010|gb|BF425950.1|BF425950
EST:     GATTGGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: GATT-GTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31459175|gb|CD401203.1|CD401203
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTTATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31470063|gb|CD412091.1|CD412091
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTAATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|9899088|gb|BE608056.1|BE608056
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|17400262|gb|BM177036.1|BM177036
EST:     TTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGACCATTTGACCCATTGGGGCTT
genomic: TTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209716660|gb|BW682221.1|BW682221
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|214009654|gb|DB986865.1|DB986865
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|14258539|gb|BG881447.1|BG881447
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|120530661|gb|EH258794.1|EH258794
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|26057166|gb|CA800080.1|CA800080
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|13481927|gb|BG511270.1|BG511270
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|192309277|gb|FG999476.1|FG999476
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAG-TGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209711062|gb|BW665278.1|BW665278
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31561938|gb|CD487776.1|CD487776
EST:     AGATAGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGA
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGA
EST: gi|209702229|gb|BW652362.1|BW652362
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|22523574|gb|BU082385.1|BU082385
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31462112|gb|CD404140.1|CD404140
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACCAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31307545|gb|CD392748.1|CD392748
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|13481887|gb|BG511230.1|BG511230
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCATGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|9203469|gb|BE329693.1|BE329693
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|151412521|gb|EV282333.1|EV282333
EST:     GATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCT
genomic: GATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGG-CCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCT
EST: gi|31461523|gb|CD403551.1|CD403551
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|120531268|gb|EH259401.1|EH259401
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|15204904|gb|BI427672.1|BI427672
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|6071769|gb|AW101156.1|AW101156
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209721658|gb|BW682497.1|BW682497
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31463834|gb|CD405862.1|CD405862
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|11411842|gb|BF423853.1|BF423853
EST:     TTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: TTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31465055|gb|CD407083.1|CD407083
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|13479687|gb|BG509030.1|BG509030
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209718592|gb|BW662697.1|BW662697
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|6134110|gb|AW132503.1|AW132503
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|15200139|gb|BI424193.1|BI424193
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|26268911|gb|CA819974.1|CA819974
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|10843127|gb|BF067157.1|BF067157
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31456135|gb|CD398163.1|CD398163
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACCAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209720873|gb|BW662599.1|BW662599
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|11411960|gb|BF423971.1|BF423971
EST:     GTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: GTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|23728211|gb|BU762151.1|BU762151
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31463641|gb|CD405669.1|CD405669
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|13788147|gb|BG650739.1|BG650739
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|26268091|gb|CA819154.1|CA819154
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|9902948|gb|BE611916.1|BE611916
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|214005610|gb|DB984618.1|DB984618
EST:     AGATTGTTCTTGTGGGAGTTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|120534112|gb|EH262245.1|EH262245
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCACGTGGTCCATTTGACCCATTGGGG
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGG
EST: gi|9820912|gb|BE556422.1|BE556422
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAATACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|7796165|gb|AW781562.1|AW781562
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|26057356|gb|CA800270.1|CA800270
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209722543|gb|BW682641.1|BW682641
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|213619950|gb|DB976926.1|DB976926
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31458586|gb|CD400614.1|CD400614
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|213596641|gb|DB977985.1|DB977985
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|15200628|gb|BI424446.1|BI424446
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209698466|gb|BW667263.1|BW667263
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209705309|gb|BW667980.1|BW667980
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|214009183|gb|DB989899.1|DB989899
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31311624|gb|CD396827.1|CD396827
EST:     AGA-TGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|192309278|gb|FG999477.1|FG999477
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31309545|gb|CD394748.1|CD394748
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACCAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|6134023|gb|AW132473.1|AW132473
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|120530617|gb|EH258750.1|EH258750
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|31458677|gb|CD400705.1|CD400705
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTTATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|9205216|gb|BE331440.1|BE331440
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATNTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGAGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|214005712|gb|DB988665.1|DB988665
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|12688810|gb|BG155146.1|BG155146
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|15285047|gb|BI468938.1|BI468938
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|209725348|gb|BW658246.1|BW658246
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|20813024|gb|BQ297502.1|BQ297502
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|5509200|gb|AI855758.1|AI855758
EST:     AGATTGGTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGNCTG                         TATCTCGAAGACAAACTTCATCCCAG-TGGTCCATTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCC-AGGTGGTCCATTT
EST: gi|5677808|gb|AI938938.1|AI938938
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|15285094|gb|BI468985.1|BI468985
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT
EST: gi|5606982|gb|AI901080.1|AI901080
EST:     AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTG                         AATTTCGAAGACAAACTTCATCCAGGTGGTCCATGTGACCCATTGGGGCTT
genomic: AGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGgtatgtaaat ... ttttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcgcacgcttaatgatttgatttatttactaattgtaacctattttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTTGCAAATGATCCAGACCAAGCTGCACTGCTAAAGGTGAAGGAAATTAAAA
                                         cctatttt  CT-rich tract
           ttaatgatttgattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccatttgacacattcaaaagcaagtttgtggagcatgaacaatcccattcgcacgcttaatgatttgatttatttactaattgtaacctattttgaacagAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTTGCAAATGATCCAGACCAAGCTGCACTGCTAAAGGTGAAGGAAATTAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
ccatttg
- - - - -acattca
- - - - - - - - - - - -gtttgtg
- - - - - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - gcacgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaacc