Sequence
atgc intronic sequence ATGC exonic sequence...ttttaacgttaaacttcaatttaagctgttaattgtttttttaggttgttacttggttgttttgcactggataagcttattttccttcacttatatgcagGTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAG
Basic information
species | Glycine max |
transcript | GLYMA16G32820.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G040158_T02 (Zea mays), 3'ss of exon 7
----ttttaacgttaaacttcaatttaagctgtta-attgtttttttaggttgttacttggttgttttgcactggataagcttattttccttcacttatatgcagGTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAG
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cagacagttgtcttacgcttaaatcatactcaccatatgactaattccatttggcatatcaatgacgtatacttatcagaattatcgtgttcaact-----gcagGTGGAGACTTTTGCTCAATTTGGTGTAGTGTTTCTTCTTTTTGCTCTTGGTCTCGAGTTTTCACTGACTAAG
upper sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G51710.1 (Arabidopsis thaliana), 3'ss of exon 7
-ttttaacgttaaacttcaatttaagctgttaattgtttttttaggttgttacttggttgttttgcactggataagcttattttccttcacttatatgcagGTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAG
| | | || | | | | | || | | | || | | ||| | | || || | || ||| |||||||||||| || ||||| |||||||| || || ||||| ||||||||||| |||| || || || | |||
gtatgggtataaatgaaaggatgacgtggagccccacagtcatacggaaaaagtactctggtattcacattttctgtttcttcttctgatgctatg-gcagGTTGAAACCGTAGCACAGTTTGGTGTTGTTTTCCTTCTGTTTGCTTTGGGTTTGGAATTCTCAATGACTAAG
upper sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 7
ttttaacgttaaacttcaatttaagctgttaattgttt--ttttaggttgttacttggttgttttgcactggataagcttattttccttcacttatatgcagGTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAG
| | | | | || | | |||| || | || || | | || | || || | | | | | || || | |||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| ||||| || |||||
-tcagtcaattatgtgcagtg-attctgtcaactacttgacttgtgatgagtattcatatgacatgtcatttcttttttcttaattattatttttattacagGTTGAAACTGTTGCACAGTTTGGTGTTGTCTTTCTTCTTTTTGCTTTGGGGCTGGAATTTTCTTTGCCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttacttggttgttttgcactggataagcttattttccttcacttatatgcagGTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAG
cttattttccttcact CT-rich tract
ttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttaacgttaaacttcaatttaagctgttaattgtttttttaggttgttacttggttgttttgcactggataagcttattttccttcacttatatgcagGTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - gctgtta
- - - - - - - - - - - - - - - - - - - - - -ggttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcactg