1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attttcttttcttgtaagtacacaaagaaaattttatctgaacagggccataatattctacattttcatcctgtgttttgatagtagcaatcttttatagGTCGAAGAGAGCAATAACTCTCAGTTGTCTAGGCTGGAGGATTTAAAAAGACGATTAGAAGCTATGAATCCGAATCGAAGTTCAACTAGTCTGCATAGTG
species | Glycine max |
transcript | GLYMA16G32510.5 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGAAGAGGCAATAAAGCAGAAGTTATGTGAAGACTTAAGCAAACTG GTCGAAGAGAGCAATAACTCTCAGTTGTCTAEST: gi|20498491|gb|BQ273421.1|BQ273421
genomic: AAGAAGAAGAGGCAATAAAGCAGAAGTTATGTGAAGACTTAAGCAAACTGgtaaatagat ... tcttttatagGTCGAAGAGAGCAATAACTCTCAGTTGTCTA
EST: AAGAAGAAGAGGCAATAAAGCAGAAGTTATGTGAAGACTTAAGCAAACTG GTCGAAGAGAGCAATAACTCTCAGTTGTCTAGGCTGGAGGATTTAAAAAGA
genomic: AAGAAGAAGAGGCAATAAAGCAGAAGTTATGTGAAGACTTAAGCAAACTGgtaaatagat ... tcttttatagGTCGAAGAGAGCAATAACTCTCAGTTGTCTAGGCTGGAGGATTTAAAAAGA
ggccataatattctacattttcatcctgtgttttgatagtagcaatcttttatagGTCGAAGAGAGCAATAACTCTCAGTTGTCTAGGCTGGAGGATTTAAAAAGACGATTAGAAGCTATGAATCCGAATCGAAGTTCAACTAGTCTGCATAGTG
ttttgat putative branch site (score: 4)
tcttttat putative PPT
taatattctacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttcttttcttgtaagtacacaaagaaaattttatctgaacagggccataatattctacattttcatcctgtgttttgatagtagcaatcttttatagGTCGAAGAGAGCAATAACTCTCAGTTGTCTAGGCTGGAGGATTTAAAAAGACGATTAGAAGCTATGAATCCGAATCGAAGTTCAACTAGTCTGCATAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC