Sequence
atgc intronic sequence ATGC exonic sequence...agtgattgtggatgccttctgtcaatcaactaaaagttcagcacacattaatttagacagatcttctctttatttttaattggtcattttcctgctgtagATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTACCGGCTTTACTGTGAGAA
Basic information
species | Glycine max |
transcript | GLYMA16G32480.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G32480.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 5
agtgattgtggatgccttctgtcaatcaactaaaag---ttcagcacacattaatttagacagatc--ttctctttatttttaattggtcattttcctgctgtagATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTACCGGCTTTACTGTGAGAA
|| | | || || | || | | | || ||| | || || | | | || || | |||| | || | | || | || |||||||||| || || |||||||| |||||||| |||||||||||||| || || |||| ||| ||
-----gtgctggttttttgtgaaacccatttccatggttttgtgcatgccttgtttcttataccccaattttcagttttttcacttattaaaattatgtttccagGTTGTTGATGGGAAGCTTTCACAGACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAA
upper sequence: GLYMA16G32480.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0036g00810.t01 (Vitis vinifera), 3'ss of exon 4
agtgattgtggatgccttctgtcaatcaactaaa-agttcagcacaca--ttaatttagacagatc--ttctctttatttttaattggtcattttcctgctgtagATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTACCGGCTTTACTGTGAGAA
|| | | || || | || | | ||| | || || || | | | || || | |||| | || | || | || |||| ||||| || || |||||||| |||||||| |||||||||||||| || | |||| ||| ||
-----gtgctggttttttgtgaaacccatttccatggttttgtgcatggcttgtttcttataccccaattttcagttttttcacttataaaaattatgtttccagGTTGTCGATGGGAAGCTTTCACAGACTTGTTATCTGATGGCACTTGATTCTTGCAATAAACTTTTGTGTTCCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192293854|gb|FG986063.1|FG986063EST: TGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCA ATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCC
genomic: TGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCTAGCGAATATCCAgtaatgctct ... cctgctgtagATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattaatttagacagatcttctctttatttttaattggtcattttcctgctgtagATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTACCGGCTTTACTGTGAGAA
ttttaat putative branch site (score: 3)
tcattttcct putative PPT
tttatttttaattggt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtgattgtggatgccttctgtcaatcaactaaaagttcagcacacattaatttagacagatcttctctttatttttaattggtcattttcctgctgtagATTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTACCGGCTTTACTGTGAGAA
-gtgattg
- - - - -ggatgcc
- - - - - - - - ttctgtc
- - - - - - - - - - - - - - - - - - - - -cacacat