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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttacataagctctttgccataaatgcctgattcattttcctttagactctaagtaatgtattaataggttttgttttattttgttaatttggtacatttcttccaactggtttatgtcttttagGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTT

Basic information

species Glycine max
transcript GLYMA16G32370.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32370.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0100g00320.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------gtaagtttacataagctctttgccataa-atgcctgattcattt----tcctttagactctaagtaatgtatt----aataggttttgttttattttgttaatttggtacatttct-------tccaactggtttatgtctttt---agGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTT
                           | |    |    |    |||  ||| | |||  | || || |     ||   ||  ||  ||| |   | ||    || |  |||   | | ||||    | || || | || ||          |  |  | | | ||||||   |||| |||||||||||||  ||||||||| | |||||  | || || || || || ||||| |||||| |||| ||||||||||| || |||||||||||||
gtaagttggtttttagcatgatatgtattatccaatgagaatcttttagcatgatatgtattatccaatgagaatctggtattcttaaaggagcatctttagaaacatatttgaatctgttttagccacttagtcctttcctgatttgccttacgtaatatttctcttttttcagGTCTGGAACCTTGAAAATTTGCAGTGTCTGCAGACGTTGACTGAACATACTTCAGTTGTAATGTCTCTTCTTTGCTGGGACCAGTTTCTTTTATCTTGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590921|gb|AW706664.1|AW706664
EST:     TTGTTGGTGCCAATAGACTTTACTCTGGTTCAATGGACAATACAATAAGA                         GTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACA
genomic: TTGTTGGTGCCAATAGACTTTACTCTGGTTCAATGGACAATACAATAAGAgtaagtttac ... tgtcttttagGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttttattttgttaatttggtacatttcttccaactggtttatgtcttttagGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTT
            tgttaat  putative branch site (score: 3)
                                             tgtctttt  putative PPT
     tttattttgttaattt  TA-rich tract