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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtttacatttttacttgtcatcattatattagatacttgtttacagtatttgtcttttcagtctactcatagaaactgccaaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA

Basic information

species Glycine max
transcript GLYMA16G30030.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 3'ss of exon 5
tggtttacatttttacttgtcatcattatattagatacttgtttacagtatttgtcttttcagtctactcatagaaactgccaaat--catccctt------aaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
      ||||| |  |      | |  | | |  |   ||| || || |   || ||  || || ||||  || |||   | | |    |||| ||      |||||||| |  || || ||||| ||||| |||||||||||| |||| || |||||  ||||||| || || || ||||| |||||||||||||  ||||| || |
----ccacattct-gcagaattttacga-acttcacttttgcttgcact-cctgactcctctgtttactt-taaaaataactatacactatccatttattcaaaacagGTTGATGATAAACTTTATATATACCTGGAGTATGTTTCTGGTGGATCCATCCATAAACTACTCCAGGAGTATGGGCAATTTGGTGAACCTGCTATCCGCA

upper sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G175504_T01 (Zea mays), 3'ss of exon 4
tggtttacatttttacttgtcat-cattat-attagatacttgtttacagtatttgtcttttcagtctactcatagaaactgccaaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
  |  | ||      |||||||   || || | |||     ||  | || |||||   |||| || | |   |   | ||    |  |   |||  ||  |||| |  || || |||||||||||| |||| |||||| |||| || |||||| |||||||||| ||||||||||||||  ||||||||| ||| || || |
gagagttcacaacagcttgtcacatatcattaatagggttatggatgcattattttcatttttaggc-atgaacttatac-attatgtttgcccaaaattagGTTGAAGATAAACTTTACATATATTTGGAATATGTTTCTGGTGGATCCATACATAAACTTCTACAAGAATATGGACAGCTTGGTGAACCAGCAATACGCA

upper sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 5
lower sequence: AC209208.3_FGT001 (Zea mays), 3'ss of exon 4
-tggtttacatttttacttgtcatcattatattagatacttg-tttacagtatttgtcttttcagtctactcatagaaactgccaaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
  |  | ||||| ||   ||  ||      | || ||| ||  ||| |   ||   |||| | | ||| || |  | | || ||| ||  |     ||| |||| |  || |||||||||||||| |||||||||||| |||| || || ||| |||| ||||| ||||| |||||||| |||||||||| ||| ||| | |
tagaatcacattcttttctgg-atggagggagtacatagttacttttccccatgcatcttgtgattcttctaaatgcatct-ccatatattatacaaaatagGTTGATGATAAGCTTTACATATACCTGGAGTATGTTTCTGGTGGATCTATACATAAGCTTCTCCAAGAGTATGGACAGTTTGGTGAACAAGCCATTTGCA

upper sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 5
-tggtttacatttttacttgtcatcattatattagatacttgtttacagtatttgtcttttcagtctactcatagaa-actgccaaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
  |  || |||| ||  |||  |       | || ||| || |||    |   ||  | ||  |  || ||  |  | |   ||| || ||     |||||||| |  || |||||||||||||| |||||||||||| |||| || || ||| |||| ||||| ||||| ||||| || ||||||||||  || ||||| |
tagaattgcattcttttttgg-acggaaggagtacatagttatttttcct-catgcatcttgtgattattcgaaatacatctccatattatattgaaaacagGTTGATGATAAGCTTTACATATACCTGGAGTATGTTTCTGGTGGATCTATACATAAGCTTCTCCAAGAGTATGGTCAGTTTGGTGAACAGGCCATTCGCA

upper sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 4
tggtttacatttttact-tgtcat-cattatattagatacttgtttacagtatttgtctt--ttcagtctactcatagaaactgccaaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
   ||| || | ||  |   ||||     ||||||  |    |||  || | || ||  |  |    | |||| ||| || || || ||| || || | ||||||| || ||||| ||||| |||||  ||||||||||  |||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||
---tttgcaatattgttgcatcatgtgcaatattatgtttcagttggcacttttggttatcgtcttttgtactgatataacct-cccaattattccatgaacagGTTGGTGACAAACTTTATATATACTTGGAGTATGTATCTGGTGGCTCCATCTATAAACTTCTTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtatttgtcttttcagtctactcatagaaactgccaaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
                                        tcatccctt  CT-rich tract
                         atagaaa  TA-rich tract