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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatgatttgcaactcgatatcaatttaaaatatttactcggtaacattactgagtagtagttgtctacttaacatgtccctgtattaatatgactagattatactttatttgaagttacttcagacttaacatatcatggatattcacttcttgatttctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTCTCGATGATTGGGGATGCCTTCAAAGAGCTGGGTATGCTAGACAAATACC

Basic information

species Glycine max
transcript GLYMA16G29590.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401823|gb|EV271636.1|EV271636
EST:     AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG                         ATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
EST: gi|192297883|gb|FG988353.1|FG988353
EST:     AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG                         ATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
EST: gi|151405551|gb|EV275365.1|EV275365
EST:     AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG                         ATATTTGCCGACATGGAGGAGCTTTGTC
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTC
EST: gi|209707454|gb|BW664913.1|BW664913
EST:     AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG                         ATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
EST: gi|151407484|gb|EV277299.1|EV277299
EST:     AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG                         ATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
EST: gi|7926391|gb|AW832417.1|AW832417
EST:     AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG                         ATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattatgat ... tctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttacttcagacttaacatatcatggatattcacttcttgatttctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTCTCGATGATTGGGGATGCCTTCAAAGAGCTGGGTATGCTAGACAAATACC
                                   cttcttgatttctcct  CT-rich tract
              ttaacatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattatgatttgcaactcgatatcaatttaaaatatttactcggtaacattactgagtagtagttgtctacttaacatgtccctgtattaatatgactagattatactttatttgaagttacttcagacttaacatatcatggatattcacttcttgatttctcctgtagATATTTGCCGACATGGAGGAGCTTTGTCTTCGACCTAATATTGCTGTTGTCTCGATGATTGGGGATGCCTTCAAAGAGCTGGGTATGCTAGACAAATACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT