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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttacatctactttttcttatattgtttactttatactatagaacttttctgacaattttttttggatgttattctgcagATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTTAGATACTCAAATCGGGTCACAAATCCAGTTACCAAGACA

Basic information

species Glycine max
transcript GLYMA16G29030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29030.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g01860.t01 (Vitis vinifera), 3'ss of exon 4
-----gtatg--ttacatctactttttcttatattgtttactttatactatagaacttttctgacaattttttttggatgttattctgcagATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTTAGATACTCAAATCGGGTCACAAATCCAGTTACCAAGACA
     || ||  |||||| |      ||| | | | |  |  || |  | | |  |  || |  ||| |   ||| ||| | |  |||||| |||||  | ||||||||||| || ||||| ||||||||||| || || ||||||||| | ||||| ||||||   ||||||||   ||| |||    | 
gtatagtttgatttacatttctggcctctgaaactatcaagcttct--tgtggtccgattttctcaaatgcattttgatttgaacctgcagGTTCTCATTGGCATGGTGGGCTTACACTTTCCCAATGACTGGGGCTGCCATTGCAACCATCAGATATTCAAATGAAGTCACAAACATAGTGACCCGATCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactttatactatagaacttttctgacaattttttttggatgttattctgcagATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTTAGATACTCAAATCGGGTCACAAATCCAGTTACCAAGACA
                      ttctgac  putative branch site (score: 2)
                                            ttattct  putative PPT
     tttatactatagaa  TA-rich tract