1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cattatttgtactgggtatatccagtttgatgataatattgattgtttgcaacacctaatatcaacttatcttttgtttcattgacatttttgcttccagAACATTTAGTGGACTCTGATTTAGGTAGAAAAGCTGGGGTTTCTGCTAAAAGTCAGGTGTCAAACTTGGAGAAGGATAAAGGTCAATTTGATGACAATAA
species | Glycine max |
transcript | GLYMA16G28350.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCACCAGGATTTTTTGATGACAGCGATTCAGGAAAAACAAGATCTG AACATTTAGTGGACTCTGATTTAG-TAGAAAAGCTGGGGTTTCTGCTAAAAEST: gi|208326345|gb|GE121497.1|GE121497
genomic: GCTTCCACCAGGATTTTTTGATGACAGCGATTCAGGAAAAACAAGATCTGgtaagaattt ... ttgcttccagAACATTTAGTGGACTCTGATTTAGGTAGAAAAGCTGGGGTTTCTGCTAAAA
EST: GATGACAGCGATTCAGGAAAAACAAGATCTG AACATTTAGTGGACTCTGATTTAGGTAGAAAAGCTGGGGTTTCTGCTAAAAEST: gi|18040056|gb|BM308350.1|BM308350
genomic: GATGACAGCGATTCAGGAAAAACAAGATCTGgtaagaattt ... ttgcttccagAACATTTAGTGGACTCTGATTTAGGTAGAAAAGCTGGGGTTTCTGCTAAAA
EST: AAACAAAATCTG AACATTTAGTGGACTCTGATTTAGGTAGAAAAGCTGGGGTTTCTGCTAAAA
genomic: AAACAAGATCTGgtaagaattt ... ttgcttccagAACATTTAGTGGACTCTGATTTAGGTAGAAAAGCTGGGGTTTCTGCTAAAA
tttgcaacacctaatatcaacttatcttttgtttcattgacatttttgcttccagAACATTTAGTGGACTCTGATTTAGGTAGAAAAGCTGGGGTTTCTGCTAAAAGTCAGGTGTCAAACTTGGAGAAGGATAAAGGTCAATTTGATGACAATAA
cattgac putative branch site (score: 3)
tttttgcttcc CT-rich tract
taatatcaacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattatttgtactgggtatatccagtttgatgataatattgattgtttgcaacacctaatatcaacttatcttttgtttcattgacatttttgcttccagAACATTTAGTGGACTCTGATTTAGGTAGAAAAGCTGGGGTTTCTGCTAAAAGTCAGGTGTCAAACTTGGAGAAGGATAAAGGTCAATTTGATGACAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA