1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaactatatccaaattttgtccatgttatttatgggatacaacaatatcaatcttcttttcatttatatttcaatccttttatgaacttgagtttattttgcttcagctgtagttgactttgactggtctcttgatctttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTAAAGAACAAGATACGAAAGATGCTGTAAGCAGCGATGCAAAGGATGCACC
species | Glycine max |
transcript | GLYMA16G27570.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTAEST: gi|209703751|gb|BW665024.1|BW665024
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCAGAAGCATCTGCTAGTAEST: gi|213614007|gb|DB960972.1|DB960972
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: CATGCGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG CTGATGAGAGTGAEST: gi|208245977|gb|GE044821.1|GE044821
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGA
EST: GGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTAEST: gi|192323243|gb|FK017409.1|FK017409
genomic: GGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTAEST: gi|193330348|gb|FK294912.1|FK294912
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTAEST: gi|192295643|gb|FG990497.1|FG990497
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTAEST: gi|192327386|gb|FK018148.1|FK018148
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
EST: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATG CTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAATGACGATGgtaactatat ... ttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTA
ttattttgcttcagctgtagttgactttgactggtctcttgatctttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTAAAGAACAAGATACGAAAGATGCTGTAAGCAGCGATGCAAAGGATGCACC
tcttgat putative branch site (score: 4)
tctcttgatcttttt CT-rich tract
atcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactatatccaaattttgtccatgttatttatgggatacaacaatatcaatcttcttttcatttatatttcaatccttttatgaacttgagtttattttgcttcagctgtagttgactttgactggtctcttgatctttttgttcagCTGATGAGAGTGACACAGAAGAGGAGTTTGTAGCTGAAGCATCTGCTAGTAAAGAACAAGATACGAAAGATGCTGTAAGCAGCGATGCAAAGGATGCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG