1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attgtcttctcattagtttatgatttacttactgtgttttggatttttcttattatgccgtgttagatgtgcataaccatctgcattatttaaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGTTAAACAAGAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCC
species | Glycine max |
transcript | GLYMA16G27220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAG TTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGEST: gi|42723210|gb|CK769109.1|CK769109
genomic: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAGgtcagaataa ... taaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTG
EST: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAG TTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGEST: gi|254330364|gb|GR841629.1|GR841629
genomic: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAGgtcagaataa ... taaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTG
EST: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAG TTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGEST: gi|192322955|gb|FK016686.1|FK016686
genomic: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAGgtcagaataa ... taaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTG
EST: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAG TTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGEST: gi|209716352|gb|BW650751.1|BW650751
genomic: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAGgtcagaataa ... taaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTG
EST: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAG TTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGEST: gi|192325038|gb|FK016164.1|FK016164
genomic: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAGgtcagaataa ... taaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTG
EST: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAG TTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTTGCTGAAGTTEST: gi|192325422|gb|FK018378.1|FK018378
genomic: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAGgtcagaataa ... taaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATT-GCTGAAGTT
EST: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAG TTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGEST: gi|193431465|gb|FK396091.1|FK396091
genomic: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAGgtcagaataa ... taaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTG
EST: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAG TTCCAAGGAGGCCAGATTTCAGCTTAGAATGTTGAACAAATTGC
genomic: CACAATGTATGAATTTGATGCTGCGGTTAATGGAGCACTTGTTATCAAAGgtcagaataa ... taaactgcagTTCCAAGGAGGCCAGATTTCAGCTT-GAATGTTGAACAAATTGC
tttcttattatgccgtgttagatgtgcataaccatctgcattatttaaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGTTAAACAAGAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCC
gcataac putative branch site (score: 3)
attatttaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtcttctcattagtttatgatttacttactgtgttttggatttttcttattatgccgtgttagatgtgcataaccatctgcattatttaaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGTTAAACAAGAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - -cttactg
- - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatta