1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcttttctttgttcttatgttaaagatcatggtaaaattatctatatgtgattgacaactgcaggttatcaaaatactgagaaattgtgtaacctgcagGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGATATCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTC
species | Glycine max |
transcript | GLYMA16G27200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGT GAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGEST: gi|209716318|gb|BW657464.1|BW657464
genomic: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTgtatgttatt ... taacctgcagGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTG
EST: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAA-GGAAATCAGT GAAATTGCATGGCACCGGCTTGATGATCTTCA-CCAGNCA-GTGATGAAGTEST: gi|151410336|gb|EV280151.1|EV280151
genomic: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTgtatgttatt ... taacctgcagGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAG-CAAGTGATGAAGT
EST: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGT GAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGEST: gi|151409239|gb|EV279047.1|EV279047
genomic: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTgtatgttatt ... taacctgcagGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTG
EST: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGT GAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAEST: gi|192314036|gb|FK007376.1|FK007376
genomic: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTgtatgttatt ... taacctgcagGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAA
EST: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGT GAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTG
genomic: GAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTgtatgttatt ... taacctgcagGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTG
tatgtgattgacaactgcaggttatcaaaatactgagaaattgtgtaacctgcagGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGATATCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTC
gtgtaac putative branch site (score: 3)
ttatcaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttttctttgttcttatgttaaagatcatggtaaaattatctatatgtgattgacaactgcaggttatcaaaatactgagaaattgtgtaacctgcagGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGATATCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG