1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttctaactgaattttctggataaatattgctcatttccatcacttaactgttgaattagaatatcaaattcttatgtattacatgtcaaatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCCGGAAATGGCGCTGTTACAAGCTCAACTAATCT
species | Glycine max |
transcript | GLYMA16G27060.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAG ACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCCEST: gi|5770839|gb|AI974013.1|AI974013
genomic: CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAGgtgattgatt ... aatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
EST: ATGAAAAAGGCTTCTATGAGTGTGAG ACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCCEST: gi|19270763|gb|BM887019.1|BM887019
genomic: ATGAAAAAGGCTTCTATGAGTGTGAGgtgattgatt ... aatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
EST: CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTTTATTAGTGTGAG ACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCCEST: gi|15338067|gb|BI498723.1|BI498723
genomic: CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAGgtgattgatt ... aatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
EST: CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTCTGAG ACTGAAGTACTGAAGCAATTATCGTCCATGGGTCGACTAGTGGTTTGTGCC
genomic: CTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAGgtgattgatt ... aatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCC
ttaactgttgaattagaatatcaaattcttatgtattacatgtcaaatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCCGGAAATGGCGCTGTTACAAGCTCAACTAATCT
acttaac putative branch site (score: 3)
aattagaatatcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctaactgaattttctggataaatattgctcatttccatcacttaactgttgaattagaatatcaaattcttatgtattacatgtcaaatgctgcagACTGAAGTACTGAAGCAATTATCATCCATGGGTCGACTAGTGGTTTGTGCCGGAAATGGCGCTGTTACAAGCTCAACTAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA