Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACATAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT

Basic information

species Glycine max
transcript GLYMA16G27010.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27010.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 3'ss of exon 5
gcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACATAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT
                  |  |||   ||  ||  ||       ||     |  |||| |   | ||| |    |  ||  | |   |  ||  | |||||  |||  |||||||||||||||| |||||| |||||||||| ||||| |||||||| ||| ||||||||||||| |||||| | |||||||| ||||| || ||||| |
-----------------gtcagtaaccactaattcac------tactattctgatattttctgtgtttgtgtacaatattgtgaccttgatt--tactttca-att--agGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCATGGCTATGTTATGGAATACAAGGCTCATGATGCTTCTCTCCGTGACAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283787|gb|BE021346.1|BE021346
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCA--T-G                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|37997491|gb|CF809080.1|CF809080
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGCTG                         N-T--A-TGGCTCTGTGAGATTCAATCAAACGTCA
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCA
EST: gi|58021292|gb|CX708033.1|CX708033
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|31468281|gb|CD410309.1|CD410309
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCA----G                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|13788932|gb|BG651523.1|BG651523
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCA----G                         GCTGTAATGGCTCTGTGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|192299481|gb|FG990790.1|FG990790
EST:     TGAG-ATAT-T-GAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|207680098|gb|GD663712.1|GD663712
EST:     AATCGCAATGCTTCGGACCATCA----G                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: AATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|151394261|gb|EV264132.1|EV264132
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|10255799|gb|BE823565.1|BE823565
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCA----G                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|208024801|gb|GD825131.1|GD825131
EST:     AATCGCAATGCTTCGGACCATCA----G                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: AATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|192295554|gb|FG988128.1|FG988128
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGAT-CAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|254329999|gb|GR839552.1|GR839552
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCA----G                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|37995997|gb|CF807586.1|CF807586
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|19269428|gb|BM885684.1|BM885684
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATC
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATC
EST: gi|37994217|gb|CF805963.1|CF805963
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|16105854|gb|BI893594.1|BI893594
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCA----G                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|58020447|gb|CX707189.1|CX707189
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|58017961|gb|CX704703.1|CX704703
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|19346443|gb|BM891323.1|BM891323
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATC
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATC
EST: gi|31464192|gb|CD406220.1|CD406220
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCA----G                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|57575959|gb|CX548930.1|CX548930
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|193552841|gb|FK505706.1|FK505706
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|207834470|gb|GD807715.1|GD807715
EST:     CGCAATGCTTCGGACCATCA----G                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: CGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|151413065|gb|EV282873.1|EV282873
EST:     TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGG---                         -CTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattat ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttccttttttttagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACATAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT
                                ttgttcctgctttctc  CT-rich tract
        ttttttttagaa  TA-rich tract