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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgaatgttatttattgaccaatcatgacttttaatataatacatatttcttagctgacttaaatgacctatttgcctgtttttagCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAG

Basic information

species Glycine max
transcript GLYMA16G26220.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26220.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 5
---------gtgtgaatgttatttattgaccaatcatgacttttaatataatacatatttcttagctgacttaaatgacctatttgcctgtttttagCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAG
         |  ||||   | ||| | |  ||| || || |||  || || |    |||||||  ||||       ||||| ||||| || ||  ||| ||||||| |||||||||||| || | ||||| || ||||| |||||  | |||||| |||||   || ||||| |||||||||||||||||||| |||
gtataccttggttgaaatctgtttgtaggacaaacaagatttt--atttactgtg-atttcttttctgatc-----gacctctttgcttgcttc-agCCTAGCTGTTCGTGATCTTTCCAACCTAGTAAAGCCAGAGGACATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478411|gb|AW666255.1|AW666255
EST:     AACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAG                         CTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgtgaatgt ... ctgtttttagCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatataatacatatttcttagctgacttaaatgacctatttgcctgtttttagCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAG
                     agctgac  putative branch site (score: 3)
                                            cctgttttt  putative PPT
     ataatacatatttctt  TA-rich tract