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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatactcttatcctcttctaatttgtcacttatcagcgacaataggtttatgcaaatgccctaaattttttaccacttacatctcttcagTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACGCTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACGTATATAA

Basic information

species Glycine max
transcript GLYMA16G26110.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204171|gb|BI426939.1|BI426939
EST:     AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAG                         TGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACG
genomic: AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGgtttgatact ... atctcttcagTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACG
EST: gi|16343838|gb|BI969433.1|BI969433
EST:     AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAG                         TGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACG
genomic: AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGgtttgatact ... atctcttcagTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACG
EST: gi|9439913|gb|BE440425.1|BE440425
EST:     AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAG                         TGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACG
genomic: AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGgtttgatact ... atctcttcagTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACG
EST: gi|208260441|gb|GE058567.1|GE058567
EST:     AGCAAGTTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAG                         TGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACG
genomic: AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGgtttgatact ... atctcttcagTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACG
EST: gi|6501861|gb|AW203220.1|AW203220
EST:     AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAG                         TGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACA
genomic: AGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGgtttgatact ... atctcttcagTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgacaataggtttatgcaaatgccctaaattttttaccacttacatctcttcagTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACGCTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACGTATATAA
                                      cacttac  putative branch site (score: 2)
                                            catctcttc  CT-rich tract
                          taaattttttacca  TA-rich tract