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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggcaaatatctggttaattttagatcttttgttgtttcttcctcagtttctcttcaatttgcatttctaatatggatttccattaaaaaattattaaacagTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG

Basic information

species Glycine max
transcript GLYMA16G25600.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402272|gb|EV272085.1|EV272085
EST:     GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAG                         TGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAG
genomic: GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAGgtttggcaaa ... tattaaacagTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAA
EST: gi|23064117|gb|BU578890.1|BU578890
EST:     GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAG                         TGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAA
genomic: GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAGgtttggcaaa ... tattaaacagTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAA
EST: gi|20448522|gb|BQ252646.1|BQ252646
EST:     GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAG                         TGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAA
genomic: GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAGgtttggcaaa ... tattaaacagTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAA
EST: gi|7924295|gb|AW830321.1|AW830321
EST:     GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAG                         TGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAA
genomic: GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAGgtttggcaaa ... tattaaacagTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAA
EST: gi|9565806|gb|BE475315.1|BE475315
EST:     GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAG                         TGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAA
genomic: GAAAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATATCGCAAAGgtttggcaaa ... tattaaacagTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcttcaatttgcatttctaatatggatttccattaaaaaattattaaacagTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG
                  ttctaat  putative branch site (score: 2)
 atttctaatatggatt  TA-rich tract