Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcgccaccccatggtttaatacctacgtagaaactataaagaaattgataaaaatgggaattaatagtttaattttgcatgttaaaacagGTATCTCGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAACGA

Basic information

species Glycine max
transcript GLYMA16G25490.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25490.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 5
---gtaatttc--gccaccccatggtttaatacctacgtagaaactataaagaaattgataaaaatgg-gaattaatagtttaattttgcatgttaaaacagGTATCTCGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAACGA
    | | ||   |   | ||   |       | ||  |  ||||     | |   | || |   ||  |  | |  |||||   |||  |||  ||  ||||||| | || ||||| || ||||| ||||| ||  | |||||||||||||| |||||||||| |||||||||||| |||||||||||||||||   | ||
attcttacttgaagttgctcccaagcactccccatatctcaaaacaggggaaattcttatgagtctgctggctcagaagtttg--tttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagaaattgataaaaatgggaattaatagtttaattttgcatgttaaaacagGTATCTCGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAACGA
      aaattgataaaaatgg  TA-rich tract