1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggtcaacttctatgattgtactcaatttgtggttgaattatgagcttttgacagtcacctcttccatttgacaaatttgaagtttccctcattttgatagGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATGAAATCACTCTTCGACA
species | Glycine max |
transcript | GLYMA16G25460.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTEST: gi|15812708|gb|BI784983.1|BI784983
genomic: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAGgtttgttttc ... attttgatagGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTT
EST: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTEST: gi|298190241|gb|HO032362.1|HO032362
genomic: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAGgtttgttttc ... attttgatagGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTT
EST: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTEST: gi|15338235|gb|BI498825.1|BI498825
genomic: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAGgtttgttttc ... attttgatagGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTT
EST: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAG GCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTEST: gi|192303083|gb|FG994201.1|FG994201
genomic: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAGgtttgttttc ... attttgatagGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTT
EST: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAG GCCATCAGATTTTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTT
genomic: CTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAGgtttgttttc ... attttgatagGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTT
ttttgacagtcacctcttccatttgacaaatttgaagtttccctcattttgatagGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATGAAATCACTCTTCGACA
tttccctcatttt CT-rich tract
aaatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcaacttctatgattgtactcaatttgtggttgaattatgagcttttgacagtcacctcttccatttgacaaatttgaagtttccctcattttgatagGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATGAAATCACTCTTCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -caacttc
- - - - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - -gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc