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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttaatatccatcctcaaattattttctccagttagtgttgtgcagttcattctgaaaaatttacattattttttaaattttctattttccacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG

Basic information

species Glycine max
transcript GLYMA16G25450.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25450.3 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 3'ss of exon 4
tttaatatccatcctcaaattattttctccagttagtgttgtgcagttcattctgaaaaatttacattattttttaaattttc-tattttccacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
                                |  |   | |  | || |||      | ||||  ||  |   | || | |   | |||     |  ||||||||||||||||||||||||||||||||  | || || ||||||
-----------------------------gtatggggagtatttattttatttc----attttattttgctacgtgaagtctaacacttttttattgccagTATGCTCGTATTATCCAAAAGCTTGGCTTTGCTGCTAAGTTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789639|gb|BG652230.1|BG652230
EST:     TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG                         TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGgtatgttact ... cacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
EST: gi|120530268|gb|EH258402.1|EH258402
EST:     TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG                         TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGgtatgttact ... cacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
EST: gi|208239540|gb|GE038626.1|GE038626
EST:     TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG                         TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGgtatgttact ... cacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
EST: gi|14258923|gb|BG881840.1|BG881840
EST:     TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG                         TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGgtatgttact ... cacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcattctgaaaaatttacattattttttaaattttctattttccacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
                                 ttttctattttccacc  CT-rich tract
     ttctgaaaaatttaca  TA-rich tract