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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcataatggatgtcagttccctgcttttgttgcggttattggtagatataacagccacattcacaaatttgaacattttcagGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAG

Basic information

species Glycine max
transcript GLYMA16G25380.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25380.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0023g01800.t01 (Vitis vinifera), 3'ss of exon 5
gttttcataatggatgtca-gttccctgcttttgttgcggttattggtagatataacagccacattcacaaatttgaacattttcagGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAG
|||| | |||||  |  |  |||  ||  |    || |    ||| || |   | |  | ||||| | ||    || |   ||||||| |||||||| ||||||| || ||| |||||||||||  ||||||| ||||||   || ||||   |    || || ||||| || ||||||
gtttgcttaatgacttccctgttatctcttccatttacaagaattagttggactcaatgtcacatcctca----tgga---tttcagGCTATTCTGGCAGTCATGGAGGAGTTGTAGGATCTGTACTTGTAACCAACCTTAAGACGGGAACCAGAAAAGGAGGATGGGAAAGAGCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727095|gb|BW660126.1|BW660126
EST:     AATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAG                         GATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACC
genomic: AATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGgttttcataa ... acattttcagGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcggttattggtagatataacagccacattcacaaatttgaacattttcagGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAG
                  atataac  putative branch site (score: 3)
                                              cattttc  putative PPT
                                     aaatttgaacatttt  TA-rich tract