1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtgatatgtgaaacccctgcagtacttttgtataaaaattcaatcaacattttactgcttccacttgatataatcctaaccagtattgtcctttacttgaagCTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGTGTAGAGCTAGACTGGAGAGGTATCGCCGAACAGCTGAGCGTGCA
species | Glycine max |
transcript | GLYMA16G25190.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTAGCTCTTTCACGCATTCCAGATATCCATATTCCTCAGTTTATGGTG CTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGTEST: gi|14008987|gb|BG725591.1|BG725591
genomic: CTCTAGCTCTTTCACGCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgata ... ttacttgaagCTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGT
EST: CCTCAGTTTATGGTG CTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGT
genomic: CCTCAGTTTATGGTGgtatgtgata ... ttacttgaagCTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGT
cattttactgcttccacttgatataatcctaaccagtattgtcctttacttgaagCTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGTGTAGAGCTAGACTGGAGAGGTATCGCCGAACAGCTGAGCGTGCA
tcctaac putative branch site (score: 1)
tcctttactt putative PPT
ttgatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgatatgtgaaacccctgcagtacttttgtataaaaattcaatcaacattttactgcttccacttgatataatcctaaccagtattgtcctttacttgaagCTTCCTCTTTTACTGAAAGATCAGAACGAGAAGGTGAATCAGCTCAGAGGTGTAGAGCTAGACTGGAGAGGTATCGCCGAACAGCTGAGCGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA